K-Dense-AI/scientific-agent-skills
flowio
Reads, inspects, and writes Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO. Use for low-level FCS metadata and channel inspection, NumPy event extraction, multi-dataset files, table export, and FCS 3.1 creation; use FlowKit for compensation, cytometry transforms, gating, or FlowJo workspaces.
Before you install
- Last update
- Files in folder
- 7
- Scripts
- Contains scripts. Review them before running.
- SKILL.md size
- 13 KB (about 3,383 tokens of context each time it loads)
- License
- MIT
- Source on GitHub
- K-Dense-AI/scientific-agent-skills
Skills are plain text instructions the agent follows, sometimes with scripts. Check the source, prefer repositories with many installs and stars, and read any script it ships.
Install
npx skills add K-Dense-AI/scientific-agent-skills@flowioRuns in a terminal with Node.js 18 or newer. Add -y to skip the prompts and -g to install for every project instead of this one.
Install for your agent
npx skills add K-Dense-AI/scientific-agent-skills@flowio --agent claude-code -y- Project install writes to
.claude/skills/flowio- Global install writes to
~/.claude/skills/flowio
Start a new session afterwards so the agent picks the skill up. In Claude Code you can also call it directly with /flowio.
What it does
FlowIO Purpose Use FlowIO as a lightweight, low-level reader and writer for Flow Cytometry Standard files. Examples in this skill target FlowIO 1.4.0, the current stable release verified on 2026-09-30. Standalone FlowIO checks used Python 3.13, NumPy 2.5.3, and pandas 3.0.6. FlowIO is appropriate for: - Reading FCS 2.0, 3.0, and 3.1 files - Inspecting HEADER, TEXT, ANALYSIS, and channel metadata - Retrieving event data as a two-dimensional NumPy array - Reading legacy files that contain multiple datasets - Writing list-mode, single-precision FCS 3.1 files - Preparing data for pandas,…
Excerpt from the skill's own SKILL.md. Read the full file on GitHub before installing: skills run with your agent's permissions.
Categories
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