K-Dense-AI/scientific-agent-skills
biopython
Provides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Supports batch processing, custom molecular-biology pipelines, BLAST automation, structure analysis, and motif analysis.
Before you install
- Last update
- Files in folder
- 9
- Scripts
- No script files found
- SKILL.md size
- 17 KB (about 4,306 tokens of context each time it loads)
- License
- MIT
- Source on GitHub
- K-Dense-AI/scientific-agent-skills
Skills are plain text instructions the agent follows, sometimes with scripts. Check the source, prefer repositories with many installs and stars, and read any script it ships.
Install
npx skills add K-Dense-AI/scientific-agent-skills@biopythonRuns in a terminal with Node.js 18 or newer. Add -y to skip the prompts and -g to install for every project instead of this one.
Install for your agent
npx skills add K-Dense-AI/scientific-agent-skills@biopython --agent claude-code -y- Project install writes to
.claude/skills/biopython- Global install writes to
~/.claude/skills/biopython
Start a new session afterwards so the agent picks the skill up. In Claude Code you can also call it directly with /biopython.
What it does
Biopython: Computational Molecular Biology in Python Overview Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, file I/O, database access, structural bioinformatics, phylogenetics, and many other bioinformatics tasks. These examples target Biopython 1.88 (released 6 August 2026), tested here on Python 3.13. It requires Python 3.10+ and NumPy; Python 3.10 support is deprecated. Upgrade to 1.88 for its Bio.Nexus parser security fix, in addition to the Entrez XML fix in 1.87. See the release notes.…
Excerpt from the skill's own SKILL.md. Read the full file on GitHub before installing: skills run with your agent's permissions.
Categories
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