K-Dense-AI/scientific-agent-skills
gget
Queries 20+ bioinformatics resources through CLI/Python. Supports quick lookups of gene info, BLAST/BLAT, viral sequence downloads, PDB/mmCIF structures, G2P residue annotations, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.
Before you install
- Last update
- Files in folder
- 9
- Scripts
- Contains scripts. Review them before running.
- SKILL.md size
- 11 KB (about 2,813 tokens of context each time it loads)
- License
- MIT
- Source on GitHub
- K-Dense-AI/scientific-agent-skills
Skills are plain text instructions the agent follows, sometimes with scripts. Check the source, prefer repositories with many installs and stars, and read any script it ships.
Install
npx skills add K-Dense-AI/scientific-agent-skills@ggetRuns in a terminal with Node.js 18 or newer. Add -y to skip the prompts and -g to install for every project instead of this one.
Install for your agent
npx skills add K-Dense-AI/scientific-agent-skills@gget --agent claude-code -y- Project install writes to
.claude/skills/gget- Global install writes to
~/.claude/skills/gget
Start a new session afterwards so the agent picks the skill up. In Claude Code you can also call it directly with /gget.
What it does
gget Overview gget is a command-line bioinformatics tool and Python package providing unified access to 20+ genomic databases and analysis methods. Query gene information, sequence analysis, protein structures, viral sequences, expression data, disease associations, and mouse tissue/cell specificity metrics through a consistent interface. Most gget modules work both as command-line tools and as Python functions. Important: The databases queried by gget are continuously updated, which sometimes changes their structure. Guidance here targets gget 0.30.8 (reviewed 2026-09-30). For reproducible…
Excerpt from the skill's own SKILL.md. Read the full file on GitHub before installing: skills run with your agent's permissions.
Categories
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